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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
About
About me
Posts
Notes
On short recurrences in optimal Krylov subspace solvers
Published:
Recommended citation: Casper Beentjes, "On short recurrences in optimal Krylov subspace solvers." Technical Report, Leiden University (2013).
Pattern formation analysis in the Schnakenberg model
Published:
Recommended citation: Casper Beentjes, "Pattern formation analysis in the Schnakenberg model." Technical Report, Oxford University (2014).
Computational electrochemistry
Published:
Recommended citation: Casper Beentjes, "Computational electrochemistry." Technical Report, Oxford University (2015).
Dynamics of flexible filaments in viscous fluids
Published:
Recommended citation: Casper Beentjes, "Dynamics of flexible filaments in viscous fluids." Technical Report, Oxford University (2015).
Solitary waves in magma dynamics
Published:
Recommended citation: Casper Beentjes, "Solitary waves in magma dynamics." Technical Report, Oxford University (2015).
Buckling of constrained hyper-elastic beams
Published:
Recommended citation: Casper Beentjes, "Buckling of constrained hyper-elastic beams." Technical Report, Oxford University (2015).
Quadrature on a spherical surface
Published:
Recommended citation: Casper Beentjes, "Quadrature on a spherical surface." Technical Report, Oxford University (2015).
Robustness of Turing patterns on networks
Published:
Recommended citation: Casper Beentjes, "Robustness of Turing patterns on networks." Technical Report, Oxford University (2017).
Preprints
The computation of disconnected bifurcation diagrams
Published:
Recommended citation: Patrick Farrell, Casper Beentjes, Ásgeir Birkisson, "The computation of disconnected bifurcation diagrams." arXiv:1603.00809 [math.NA]. http://arxiv.org/abs/1603.00809
Proceedings
Equalizing the cost of health insurance
Published:
Recommended citation: Casper Beentjes, Alessandro Bucchianico, Christian Hamster, Ajinkya Kadu, Irene Man, Keith Myerscough, Marta Regis, Omar Richardson, "Equalizing the cost of health insurance." Scientific Proceedings of the 126th European Study Group with Industry (2017). https://www.swi-wiskunde.nl/swi2017/wp-content/uploads/sites/4/2018/04/SWI2017_ScientificProceedings.pdf
Accurate particle-based reaction algorithms for fixed timestep simulators
Published:
Recommended citation: Stuart Johnston, Christopher Angstmann, Satya Arjunan, Casper Beentjes, Adrien Coulier, Samuel Isaacson, Ash Khan, Karen Lipkow, Steven Andrews, "Accurate particle-based reaction algorithms for fixed timestep simulators." 2018 MATRIX Annals (2020). http://link.springer.com/10.1007/978-3-030-38230-8_11
Publications
Uniformization techniques for stochastic simulation of chemical reaction networks
Published in The Journal of Chemical Physics, 2019
Recommended citation: Casper Beentjes, Ruth Baker, "Uniformization techniques for stochastic simulation of chemical reaction networks." The Journal of Chemical Physics 150 (15), 154107 (2019). http://aip.scitation.org/doi/10.1063/1.5081043
Quasi-Monte Carlo methods applied to tau-leaping in stochastic biological systems
Published in Bulletin of Mathematical Biology, 2019
Recommended citation: Casper Beentjes, Ruth Baker, "Quasi-Monte Carlo methods applied to tau-leaping in stochastic biological systems." Bulletin of Mathematical Biology 81 (8), 2931-2959 (2019). http://link.springer.com/10.1007/s11538-018-0442-2
Defining vitamin D status using multi-metabolite mathematical modelling: A pregnancy perspective
Published in The Journal of Steroid Biochemistry and Molecular Biology, 2019
Recommended citation: C. Beentjes, J. Taylor-King, A. Bayani, C. Davis, J. Dunster, S. Jabbari, G. Mirams, C. Jenkinson, M. Kilby, M. Hewison, J. Tamblyn, "Defining vitamin D status using multi-metabolite mathematical modelling: A pregnancy perspective." The Journal of Steroid Biochemistry and Molecular Biology 190, 152-160 (2019). https://www.sciencedirect.com/science/article/pii/S0960076018305983
Exact solution of stochastic gene expression models with bursting, cell cycle and replication dynamics
Published in Physical Review E, 2020
Recommended citation: Casper Beentjes, Ruben Perez-Carrasco, Ramon Grima, "Exact solution of stochastic gene expression models with bursting, cell cycle and replication dynamics." Physical Review E 101 (3), 032403 (2020). https://link.aps.org/doi/10.1103/PhysRevE.101.032403
Effects of cell cycle variability on lineage and population measurements of messenger RNA abundance
Published in Journal of The Royal Society Interface, 2020
Recommended citation: Ruben Perez-Carrasco, Casper Beentjes, Ramon Grima, "Effects of cell cycle variability on lineage and population measurements of messenger RNA abundance." Journal of The Royal Society Interface 17 (168), 20200360 (2020). https://royalsocietypublishing.org/doi/10.1098/rsif.2020.0360
Talks
Teaching
Teaching assistant
Undergraduate level (1st and 2nd year), Leiden University, 2012-2014
General duties consisted of marking work and assisting in running tutorial classes.
Teaching assistant
Undergraduate level (1st and 3rd year) and postgraduate level, Mathematical Institute, University of Oxford, 2015-2018
General duties consisted of marking work and assisting in running tutorial and modelling classes.
Tutor
Undergraduate level (3rd year), Lincoln College, Oxford, 2016-2017
General duties consisted of running various Collections tutorials (Oxford speak for exam preparation classes), including setting and marking of mock-exams.
Tutor
Undergraduate level (2nd year), New College, Oxford, 2016-2018
General duties consisted of running small-scale (one tutor on two students) tutorials, including marking coursework.
Tutor
Undergraduate level (3rd year), Mathematical Institute, University of Oxford, 2017-2019
General duties consisted of running department tutorial classes (approx. 10-20 students) and mentoring teaching assistants. In addition I ran consultation (examp prep) sessions.
Graduate teaching assistant
Undergraduate level (1st year), Balliol College, Oxford, 2018-2019
General duties consisted of marking work and assisting in running college tutorial classes (6 students).
Stipendiary lecturer
Undergraduate level (1st and 2nd year), Trinity College, Oxford, 2019-2020
General duties consisted in designing and running college tutorials (one tutor on two/three students), including marking coursework and Collections (exam prepartion).
Theses
Symmetry-breaking in patterned elastic sheets
Published:
Recommended citation: Casper Beentjes, "Symmetry-breaking in patterned elastic sheets." BSc thesis, Leiden University (2014).
Computing bifurcation diagrams with deflation
Published:
Recommended citation: Casper Beentjes, "Computing bifurcation diagrams with deflation." MSc thesis, University of Oxford (2015).
Variance reduction techniques for chemical reaction network simulation
Published:
Recommended citation: Casper Beentjes, "Variance reduction techniques for chemical reaction network simulation." PhD thesis, University of Oxford (2020).